Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs1556245 | chr6:57022958 | G/A | 3.13E-6 | 406 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs157290 | chr5:156019310 | G/A | 2.71E-5 | 406 | 16.73 | 14.37 | 11.17 | KM Plot |
| LGG | rs157291 | chr5:156019379 | C/T | 2.71E-5 | 406 | 16.73 | 14.37 | 11.17 | KM Plot |
| LGG | rs157293 | chr5:156017161 | A/G | 0.00023 | 407 | 13.38 | 13.78 | 16.77 | KM Plot |
| LGG | rs1573087 | chr10:43400015 | C/A | 6.92E-6 | 404 | 15.7 | 12.12 | 17.07 | KM Plot |
| LGG | rs1598162 | chr2:55663033 | G/A | 3.37E-7 | 401 | 2.57 | 17.65 | 15.15 | KM Plot |
| LGG | rs1598163 | chr2:55664121 | A/G | 3.06E-7 | 407 | 15.17 | 16.53 | 4.6 | KM Plot |
| LGG | rs160236 | chr14:60576951 | A/G | 0.000187 | 407 | 17.75 | 16.37 | 14.85 | KM Plot |
| LGG | rs1614182 | chr1:159004526 | C/T | 1.56E-5 | 402 | 9.63 | 17.77 | 14.93 | KM Plot |
| LGG | rs1633262 | chr1:159004888 | C/T | 1.56E-5 | 402 | 9.63 | 17.77 | 14.93 | KM Plot |
| LGG | rs1633265 | chr1:159005727 | C/T | 0.000113 | 402 | 8.77 | 17.85 | 14.93 | KM Plot |
| LGG | rs166685 | chr9:23486236 | C/T | 1.08E-9 | 407 | 18.5 | 14.4 | 15.57 | KM Plot |
| LGG | rs167272 | chr13:61436550 | C/T | 1.68E-6 | 407 | 15.93 | 12.95 | 14.45 | KM Plot |
| LGG | rs1672989 | chr19:35608868 | C/T | 5.08E-5 | 407 | 5.62 | 15.7 | 15.57 | KM Plot |
| LGG | rs16823342 | chr3:153673498 | C/T | 0 | 405 | 15.15 | 16.77 | 0.23 | KM Plot |